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M. K. Tello-Ruiz, Naithani, S., Stein, J. C., Gupta, P., Campbell, M., Olson, A., Wei, S., Preece, J., Geniza, M. J., Jiao, Y., Lee, Y. Koung, Wang, B., Mulvaney, J., Chougule, K., Elser, J., Al-Bader, N., Kumari, S., Thomason, J., Kumar, V., Bolser, D. M., Naamati, G., Tapanari, E., Fonseca, N., Huerta, L., Iqbal, H., Keays, M., Fuentes, A. Munoz- Pome, Tang, A., Fabregat, A., D’Eustachio, P., Weiser, J., Stein, L. D., Petryszak, R., Papatheodorou, I., Kersey, P. J., Lockhart, P., Taylor, C., Jaiswal, P., and Ware, D., Gramene 2018: unifying comparative genomics and pathway resources for plant research., Nucleic acids research, vol. 46, pp. D1181-D1189, 2018.
M. K. Tello-Ruiz, Stein, J., Wei, S., Preece, J., Olson, A., Naithani, S., Amarasinghe, V., Dharmawardhana, P., Jiao, Y., Mulvaney, J., Kumari, S., Chougule, K., Elser, J., Wang, B., Thomason, J., Bolser, D. M., Kerhornou, A., Walts, B., Fonseca, N. A., Huerta, L., Keays, M., Y Tang, A., Parkinson, H., Fabregat, A., McKay, S., Weiser, J., D’Eustachio, P., Stein, L., Petryszak, R., Kersey, P. J., Jaiswal, P., and Ware, D., Gramene 2016: comparative plant genomics and pathway resources., Nucleic acids research, vol. 44, pp. D1133-40, 2016.
Y. L. Ong, Ross, A. S., and Engle, D. A., Glutenin Macropolymer in Salted and Alkaline Noodle Doughs, Cereal Chemistry Journal, vol. 87, no. 1, pp. 79 - 85, 2010.
M. Shrivastava, Lou, S., Zelenyuk, A., Easter, R. C., Corley, R. A., Thrall, B. D., Rasch, P. J., Fast, J. D., Simonich, S. L. Massey, Shen, H., and Tao, S., Global long-range transport and lung cancer risk from polycyclic aromatic hydrocarbons shielded by coatings of organic aerosol., Proc Natl Acad Sci U S A, vol. 114, no. 6, pp. 1246-1251, 2017.
D. Bachelet, Hooper, R. P., Cushing, J. B., van Puijenbroek, P., Eckman, B., and Worrest, R. C., Global climate change implications for digital government research: keynote panel, in Proceedings of the 8th annual international conference on Digital government research: bridging disciplines & domains, 2007.
Y. P. Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions, BMC Genomics, vol. 14, p. 451, 2013.
Yping Chen, Pettis, J. S., Zhao, Y., Liu, X., Tallon, L. J., Sadzewicz, L. D., Li, R., Zheng, H., Huang, S., Zhang, X., Hamilton, M. C., Pernal, S. F., Melathopoulos, A. P., Yan, X., and Evans, J. D., Genome sequencing and comparative genomics of honey bee microsporidia, Nosema apis reveal novel insights into host-parasite interactions, BMC Genomics, vol. 14, no. 1, p. 451, 2013.
G. T. Slavov, DiFazio, S. P., Martin, J., Schackwitz, W., Muchero, W., Rodgers-Melnick, E., Lipphardt, M. F., Pennacchio, C. P., Hellsten, U., Pennacchio, L. A., Gunter, L. E., Ranjan, P., Vining, K. J., Pomraning, K. R., Wilhelm, L. J., Pellegrini, M., Mockler, T. C., Freitag, M., Geraldes, A., El-Kassaby, Y. A., Mansfield, S. D., Cronk, Q. C. B., Douglas, C. J., Strauss, S. H., Rokhsar, D., and Tuskan, G. A., Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa, New Phytologist, vol. 19, no. 3, pp. 713 - 725, 2012.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., The genome of woodland strawberry(Fragaria vesca)., Nature genetics, vol. 43, pp. 109-16, 2011.
V. Shulaev, Sargent, D. J., Crowhurst, R. N., Mockler, T. C., Folkerts, O., Delcher, A. L., Jaiswal, P., Mockaitis, K., Liston, A., Mane, S. P., Burns, P., Davis, T. M., Slovin, J. P., Bassil, N., Hellens, R. P., Evans, C., Harkins, T., Kodira, C., Desany, B., Crasta, O. R., Jensen, R. V., Allan, A. C., Michael, T. P., Setubal, J. Carlos, Celton, J. - M., D Rees, J. G., Williams, K. P., Holt, S. H., Rojas, J. Jairo Ruiz, Chatterjee, M., Liu, B., Silva, H., Meisel, L., Adato, A., Filichkin, S. A., Troggio, M., Viola, R., Ashman, T. - L., Wang, H., Dharmawardhana, P., Elser, J., Raja, R., Priest, H. D., Bryant, D. W., Fox, S. E., Givan, S. A., Wilhelm, L. J., Naithani, S., Christoffels, A., Salama, D. Y., Carter, J., Girona, E. Lopez, Zdepski, A., Wang, W., Kerstetter, R. A., Schwab, W., Korban, S. S., Davik, J., Monfort, A., Denoyes-Rothan, B., Arus, P., Mittler, R., Flinn, B., Aharoni, A., Bennetzen, J. L., Salzberg, S. L., Dickerman, A. W., Velasco, R., Borodovsky, M., Veilleux, R. E., and Folta, K. M., The genome of woodland strawberry(Fragaria vesca)., Nature genetics, vol. 43, pp. 109-16, 2011.
K. E. Bushley, Raja, R., Jaiswal, P., Cumbie, J. S., Nonogaki, M., Boyd, A. E., C Owensby, A., Knaus, B. J., Elser, J., Miller, D., Di, Y., McPhail, K. L., and Spatafora, J. W., The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster, PLOS Genetics, vol. 9, 2013.
A. A. Myburg, Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., Jenkins, J., Lindquist, E., Tice, H., Bauer, D., Goodstein, D. M., Dubchak, I., Poliakov, A., Mizrachi, E., Kullan, A. R. K., Hussey, S. G., Pinard, D., van der Merwe, K., Singh, P., van Jaarsveld, I., Silva-Junior, O. B., Togawa, R. C., Pappas, M. R., Faria, D. A., Sansaloni, C. P., Petroli, C. D., Yang, X., Ranjan, P., Tschaplinski, T. J., Ye, C. - Y., Li, T., Sterck, L., Vanneste, K., Murat, F., Soler, M., San Clemente, H., Saidi, N., Cassan-Wang, H., Dunand, C., Hefer, C. A., Bornberg-Bauer, E., Kersting, A. R., Vining, K., Amarasinghe, V., Ranik, M., Naithani, S., Elser, J., Boyd, A. E., Liston, A., Spatafora, J. W., Dharmwardhana, P., Raja, R., Sullivan, C., Romanel, E., Alves-Ferreira, M., Külheim, C., Foley, W., Carocha, V., Paiva, J., Kudrna, D., Brommonschenkel, S. H., Pasquali, G., Byrne, M., Rigault, P., Tibbits, J., Spokevicius, A., Jones, R. C., Steane, D. A., Vaillancourt, R. E., Potts, B. M., Joubert, F., Barry, K., Pappas, G. J., Strauss, S. H., Jaiswal, P., Grima-Pettenati, J., Salse, J., Van de Peer, Y., Rokhsar, D. S., and Schmutz, J., The genome of Eucalyptus grandis., Nature, vol. 510, pp. 356-62, 2014.
A. A. Myburg, Grattapaglia, D., Tuskan, G. A., Hellsten, U., Hayes, R. D., Grimwood, J., Jenkins, J., Lindquist, E., Tice, H., Bauer, D., Goodstein, D. M., Dubchak, I., Poliakov, A., Mizrachi, E., Kullan, A. R. K., Hussey, S. G., Pinard, D., van der Merwe, K., Singh, P., van Jaarsveld, I., Silva-Junior, O. B., Togawa, R. C., Pappas, M. R., Faria, D. A., Sansaloni, C. P., Petroli, C. D., Yang, X., Ranjan, P., Tschaplinski, T. J., Ye, C. - Y., Li, T., Sterck, L., Vanneste, K., Murat, F., Soler, çal, San Clemente, élène, Saidi, N., Cassan-Wang, H., Dunand, C., Hefer, C. A., Bornberg-Bauer, E., Kersting, A. R., Vining, K. J., Amarasinghe, V., Ranik, M., Naithani, S., Elser, J., Boyd, A. E., Liston, A., Spatafora, J. W., Dharmwardhana, P., Raja, R., Sullivan, C., Romanel, E., Alves-Ferreira, M., ülheim, C., Foley, W., Carocha, V., Paiva, J., Kudrna, D., Brommonschenkel, S. H., Pasquali, G., Byrne, M., Rigault, P., Tibbits, J., Spokevicius, A., Jones, R. C., Steane, D. A., Vaillancourt, éE., Potts, B. M., Joubert, F., Barry, K., Pappas, G. J., Strauss, S. H., Jaiswal, P., Grima-Pettenati, J., Salse, érôme, Van de Peer, Y., Rokhsar, D. S., and Schmutz, J., The genome of Eucalyptus grandis, Nature, vol. 51, no. 75, pp. 356 - 362, 2014.
R. VanBuren, Bryant, D., Bushakra, J. M., Vining, K. J., Edger, P. P., Rowley, E. R., Priest, H. D., Michael, T. P., Lyons, E., Filichkin, S. A., Dossett, M., Finn, C. E., Bassil, N. V., and Mockler, T. C., The genome of black raspberry (Rubus occidentalis)., Plant J, vol. 87, no. 6, pp. 535-47, 2016.
T. A. Parker, Gallegos, J. Acosta, Beaver, J., Brick, M., Brown, J. K., Cichy, K., Debouck, D. G., Delgado-Salinas, A., Dohle, S., Ernest, E., and , Genetic Resources and Breeding Priorities in Phaseolus Beans: Vulnerability, Resilience, and Future Challenges, Plant Breeding Reviews, vol. 46, pp. 289–420, 2022.
K. Gürcan, Mehlenbacher, S. A., and Erdogan, V., Genetic diversity in hazelnut cultivars from Black Sea countries assessed using SSR markers, Plant Breeding , vol. 129, pp. 422-434, 2010.
R. Bruskiewich, Senger, M., Davenport, G., Ruiz, M., Rouard, M., Hazekamp, T., Takeya, M., Doi, K., Satoh, K., Costa, M., Simon, R., Balaji, J., Akintunde, A., Mauleon, R., Wanchana, S., Shah, T., Anacleto, M., Portugal, A., Ulat, V. Jun, Thongjuea, S., Braak, K., Ritter, S., Dereeper, A., Skofic, M., Rojas, E., Martins, N., Pappas, G., Alamban, R., Almodiel, R., Barboza, L. Hendrix, Detras, J., Manansala, K., Mendoza, M. Jonathan, Morales, J., Peralta, B., Valerio, R., Zhang, Y., Gregorio, S., Hermocilla, J., Echavez, M., Yap, J. Michael, Farmer, A., Schiltz, G., Lee, J., Casstevens, T., Jaiswal, P., Meintjes, A., Wilkinson, M., Good, B., Wagner, J., Morris, J., Marshall, D., Collins, A., Kikuchi, S., Metz, T., McLaren, G., and van Hintum, T., The generation challenge programme platform: semantic standards and workbench for crop science., International journal of plant genomics, vol. 2008, p. 369601, 2008.
J. F. Hancock, Edger, P. P., Callow, P. W., Herlache, T., and Finn, C. E., Generating a Unique Germplasm Base for the Breeding of Day-neutral Strawberry Cultivars, HortScience, vol. 53, no. 7, pp. 1069 - 1071, 2018.
K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling.., BMC Genomics, vol. 10, p. 542, 2009.
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M. L. Evans, Shry, S. J., Jacobson, D. P., Sard, N. M., and Malley, K. G. ’, Functional gene diversity and migration timing in reintroduced Chinook salmon, Conservation Genetics, vol. 16, no. 6, pp. 1455 - 1464, 2015.
P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development., BMC Genomics, vol. 11, p. 331, 2010.
S. L. Stephens, Boerner, R. E. J., Moghaddas, J. J., Moghaddas, E. E. Y., Collins, B. M., Dow, C. B., Edminster, C., Fiedler, C. E., Fry, D. L., Hartsough, B. R., Keeley, J. E., Knapp, E. E., McIver, J., Skinner, C. N., and Youngblood, A., Fuel treatment impacts on estimated wildfire carbon loss from forests in Montana, Oregon, California, and Arizona, Ecosphere, vol. 3, no. 5, p. art38, 2012.
J. H. Y. Edwards and Langpap, C., Fuel Choice, Indoor Air pollution, and Children’s Health, Environment and Development Economics, vol. 17, no. 04, pp. 379 - 406, 2012.
C. G. Jones, érrez, J. L., Byers, J. E., Crooks, J. A., Lambrinos, J. G., and Talley, T. S., A framework for understanding physical ecosystem engineering by organisms, Oikos, vol. 11970212756219717817397618556101106978124232863812171749206342175610594, no. 12, pp. 1862 - 1869, 2010.
D. M. Esposito, Hoh, S., Rodhouse, T. J., Salli, U., and Smith, B. S., A Framework for Ecologically-based Invasive Plant Management: John Day Fossil Beds National Monument, National Park Service, Fort Collins, Colorado, 2015.